LGWAS Gateway

Welcome to Longitudinal GWAS gateway!

Collecting statistical models for longitudinal phenotype in GWAS and providing online computing environment powered on XSEDE HPC.


Packages


  1. fGWAS

    GWAS tools for longitudinal genetic traits based on fGWAS statistical model

    R

  2. Funmap2

    QTL mapping tools based on Functional Mapping for the longitudinal quantitative traits

    R

  3. gwas.lasso

    Lasso method for the estimation of joint genetic effects in GWAS

    C++

  4. LSKAT

    Longitudinal SNP-set association analysis of quantitative phenotypes

    R

Features


The Science and Engineering Applications Grid (SEAGrid) empowers researchers to easily use scientific applications deployed across a wide range of supercomputers, campus clusters, and computing cloud. SEAGrid features both a powerful desktop client and go-anywhere Web application. SEAGrid helps scientist create model inputs, simplifies access to computing resources, enables visualizations of outputs, and provides archives for simulation data.


Computational Chemistry

Collecting statistical models for longitudinal phenotype in GWAS
Optimize and characterize molecular and periodic structures and predict thermodynamics and kinetics using computational chemistry applications using Ab initio, Semi-empirical, Force-field based codes such as Gaussian, Gamess, Tinker, DFTB+.

Molecular Dynamics (MD)

Powerful free HPC environment on XSEDE.
Time evolution of large material and biological systems to predict dynamic structural and energetic characteristics using Applications such as Lammps, Amber, NAMD using mostly empirical force fields including reaction force fields.

Structural Mechanics

Web based operation, no need to install package and write scripts.
Finite element analysis of engineering structures and components for modeling static and low-speed dynamic events both in the time and frequency domain using applications such as Abaqus.

Fluid Dynamics

Modeling flow of gases and liquids under various conditions using applications such as Nek5000 and OpenFOAM.